Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC16.97■□□□□ 0.31
Brf1Q8CFK2 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Brf1Q8CFK2 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Brf1Q8CFK2 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 AC159114.1-201ENSMUST00000220349 266 ntBASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 AC154806.6-201ENSMUST00000228192 202 ntBASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC16.95■□□□□ 0.3
Brf1Q8CFK2 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Gm7820-201ENSMUST00000121012 1052 ntBASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Gm27306-201ENSMUST00000183970 107 ntBASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Brf1Q8CFK2 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Brf1Q8CFK2 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Brf1Q8CFK2 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Brf1Q8CFK2 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Brf1Q8CFK2 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Brf1Q8CFK2 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Brf1Q8CFK2 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Brf1Q8CFK2 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Brf1Q8CFK2 Gm12151-201ENSMUST00000121374 290 ntBASIC16.93■□□□□ 0.3
Brf1Q8CFK2 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Brf1Q8CFK2 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Brf1Q8CFK2 Gm3436-201ENSMUST00000179930 840 ntBASIC16.93■□□□□ 0.3
Brf1Q8CFK2 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Brf1Q8CFK2 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Brf1Q8CFK2 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC16.93■□□□□ 0.3
Brf1Q8CFK2 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms