Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ubfd1Q78JW9 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ubfd1Q78JW9 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ubfd1Q78JW9 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ubfd1Q78JW9 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ubfd1Q78JW9 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ubfd1Q78JW9 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ubfd1Q78JW9 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Ubfd1Q78JW9 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ubfd1Q78JW9 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ubfd1Q78JW9 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 AC115735.4-201ENSMUST00000227460 1944 ntBASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Gm13385-201ENSMUST00000121089 220 ntBASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Gm24420-201ENSMUST00000176676 59 ntBASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ubfd1Q78JW9 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 AC126549.2-201ENSMUST00000223997 1976 ntBASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Gm11557-201ENSMUST00000120200 1008 ntBASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Gm8927-201ENSMUST00000181978 981 ntBASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Gm3222-201ENSMUST00000071282 990 ntBASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ubfd1Q78JW9 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 Gm9908-201ENSMUST00000211534 448 ntBASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 AC155258.1-201ENSMUST00000219303 253 ntBASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Ubfd1Q78JW9 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms