Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Usf1Q61069 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Usf1Q61069 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Usf1Q61069 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Usf1Q61069 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Usf1Q61069 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
Usf1Q61069 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Usf1Q61069 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC12.74□□□□□ -0.37
Usf1Q61069 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC12.74□□□□□ -0.37
Usf1Q61069 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC12.74□□□□□ -0.37
Usf1Q61069 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
Usf1Q61069 Gm16177-201ENSMUST00000120728 718 ntBASIC12.74□□□□□ -0.37
Usf1Q61069 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Usf1Q61069 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC12.74□□□□□ -0.37
Usf1Q61069 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Gm9124-201ENSMUST00000191789 1092 ntBASIC12.74□□□□□ -0.37
Usf1Q61069 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC12.74□□□□□ -0.37
Usf1Q61069 Gm9113-201ENSMUST00000192510 1018 ntBASIC12.74□□□□□ -0.37
Usf1Q61069 Ighv1-51-201ENSMUST00000192903 354 ntBASIC12.74□□□□□ -0.37
Usf1Q61069 Gm9131-201ENSMUST00000193557 1089 ntBASIC12.74□□□□□ -0.37
Usf1Q61069 Gm9121-201ENSMUST00000193749 1071 ntBASIC12.74□□□□□ -0.37
Usf1Q61069 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC12.74□□□□□ -0.37
Usf1Q61069 Gm18054-201ENSMUST00000207539 555 ntBASIC12.74□□□□□ -0.37
Usf1Q61069 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC12.74□□□□□ -0.37
Usf1Q61069 Gm45880-201ENSMUST00000213041 853 ntBASIC12.74□□□□□ -0.37
Usf1Q61069 AC154276.1-201ENSMUST00000228874 1299 ntBASIC12.74□□□□□ -0.37
Usf1Q61069 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC12.74□□□□□ -0.37
Usf1Q61069 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
Usf1Q61069 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Usf1Q61069 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC12.74□□□□□ -0.37
Usf1Q61069 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC12.74□□□□□ -0.37
Usf1Q61069 Gm14780-201ENSMUST00000118387 2737 ntBASIC12.74□□□□□ -0.37
Usf1Q61069 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Usf1Q61069 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Sybu-209ENSMUST00000228639 4113 ntBASIC12.73□□□□□ -0.37
Usf1Q61069 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Usf1Q61069 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Gm12846-201ENSMUST00000120431 1373 ntBASIC12.73□□□□□ -0.37
Usf1Q61069 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC12.73□□□□□ -0.37
Usf1Q61069 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC12.73□□□□□ -0.37
Usf1Q61069 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC12.73□□□□□ -0.37
Usf1Q61069 Gm4959-201ENSMUST00000197271 1044 ntBASIC12.73□□□□□ -0.37
Usf1Q61069 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC12.73□□□□□ -0.37
Usf1Q61069 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC12.73□□□□□ -0.37
Usf1Q61069 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Usf1Q61069 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Usf1Q61069 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Usf1Q61069 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC12.73□□□□□ -0.37
Usf1Q61069 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC12.73□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms