Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm29127-201ENSMUST00000188304 517 ntBASIC11.97□□□□□ -0.49
Col8a1Q00780 Gm8463-201ENSMUST00000208573 613 ntBASIC11.97□□□□□ -0.49
Col8a1Q00780 Gm40466-201ENSMUST00000212174 422 ntBASIC11.97□□□□□ -0.49
Col8a1Q00780 AC126253.1-201ENSMUST00000227974 824 ntBASIC11.97□□□□□ -0.49
Col8a1Q00780 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col8a1Q00780 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Col8a1Q00780 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col8a1Q00780 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col8a1Q00780 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col8a1Q00780 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col8a1Q00780 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col8a1Q00780 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC11.97□□□□□ -0.49
Col8a1Q00780 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col8a1Q00780 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col8a1Q00780 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col8a1Q00780 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC11.97□□□□□ -0.49
Col8a1Q00780 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC11.97□□□□□ -0.49
Col8a1Q00780 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col8a1Q00780 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC11.97□□□□□ -0.49
Col8a1Q00780 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col8a1Q00780 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Col8a1Q00780 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Col8a1Q00780 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Col8a1Q00780 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC11.97□□□□□ -0.49
Col8a1Q00780 Gm37305-201ENSMUST00000195714 4279 ntBASIC11.97□□□□□ -0.49
Col8a1Q00780 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Col8a1Q00780 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Col8a1Q00780 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col8a1Q00780 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Col8a1Q00780 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC11.96□□□□□ -0.49
Col8a1Q00780 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC11.96□□□□□ -0.49
Col8a1Q00780 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Col8a1Q00780 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col8a1Q00780 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Col8a1Q00780 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Col8a1Q00780 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC11.96□□□□□ -0.49
Col8a1Q00780 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col8a1Q00780 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col8a1Q00780 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col8a1Q00780 Gm15236-201ENSMUST00000117309 379 ntBASIC11.96□□□□□ -0.49
Col8a1Q00780 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col8a1Q00780 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC11.96□□□□□ -0.49
Col8a1Q00780 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC11.96□□□□□ -0.49
Col8a1Q00780 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.49
Col8a1Q00780 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.49
Col8a1Q00780 Gm7584-201ENSMUST00000175829 940 ntBASIC11.96□□□□□ -0.49
Col8a1Q00780 AC153872.1-201ENSMUST00000199539 128 ntBASIC11.96□□□□□ -0.49
Col8a1Q00780 Gm7287-201ENSMUST00000205267 602 ntBASIC11.96□□□□□ -0.49
Col8a1Q00780 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col8a1Q00780 Gm45880-201ENSMUST00000213041 853 ntBASIC11.96□□□□□ -0.49
Col8a1Q00780 AC155258.1-201ENSMUST00000219303 253 ntBASIC11.96□□□□□ -0.49
Col8a1Q00780 AC121598.1-201ENSMUST00000228224 1019 ntBASIC11.96□□□□□ -0.49
Col8a1Q00780 AC154276.1-201ENSMUST00000228874 1299 ntBASIC11.96□□□□□ -0.49
Col8a1Q00780 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Col8a1Q00780 Gm9823-201ENSMUST00000051212 327 ntBASIC11.96□□□□□ -0.49
Col8a1Q00780 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Col8a1Q00780 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC11.96□□□□□ -0.49
Col8a1Q00780 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col8a1Q00780 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col8a1Q00780 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col8a1Q00780 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.5
Col8a1Q00780 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col8a1Q00780 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col8a1Q00780 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col8a1Q00780 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Col8a1Q00780 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col8a1Q00780 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Col8a1Q00780 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC11.96□□□□□ -0.5
Col8a1Q00780 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Col8a1Q00780 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
Col8a1Q00780 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC11.95□□□□□ -0.5
Col8a1Q00780 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
Col8a1Q00780 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC11.95□□□□□ -0.5
Col8a1Q00780 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
Col8a1Q00780 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Gm12928-201ENSMUST00000117115 573 ntBASIC11.95□□□□□ -0.5
Col8a1Q00780 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Gm15429-201ENSMUST00000151268 798 ntBASIC11.95□□□□□ -0.5
Col8a1Q00780 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC11.95□□□□□ -0.5
Col8a1Q00780 Rn7s1-201ENSMUST00000174924 300 ntBASIC11.95□□□□□ -0.5
Col8a1Q00780 Rn7s2-201ENSMUST00000175032 300 ntBASIC11.95□□□□□ -0.5
Col8a1Q00780 Gm26461-201ENSMUST00000175064 290 ntBASIC11.95□□□□□ -0.5
Col8a1Q00780 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC11.95□□□□□ -0.5
Col8a1Q00780 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC11.95□□□□□ -0.5
Col8a1Q00780 Gm18054-201ENSMUST00000207539 555 ntBASIC11.95□□□□□ -0.5
Col8a1Q00780 Gm6013-201ENSMUST00000212264 699 ntBASIC11.95□□□□□ -0.5
Col8a1Q00780 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.5
Col8a1Q00780 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC11.95□□□□□ -0.5
Col8a1Q00780 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
Col8a1Q00780 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC11.95□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms