Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nr1i3O35627 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
Nr1i3O35627 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nr1i3O35627 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nr1i3O35627 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nr1i3O35627 Gm30238-201ENSMUST00000195528 2603 ntBASIC15.1■□□□□ 0.01
Nr1i3O35627 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nr1i3O35627 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Nr1i3O35627 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC15.09■□□□□ 0.01
Nr1i3O35627 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Mir6990-201ENSMUST00000183724 91 ntBASIC15.09■□□□□ 0.01
Nr1i3O35627 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Gm29741-201ENSMUST00000192667 421 ntBASIC15.09■□□□□ 0.01
Nr1i3O35627 AW822252-206ENSMUST00000208904 237 ntBASIC15.09■□□□□ 0.01
Nr1i3O35627 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Nr1i3O35627 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC15.09■□□□□ 0.01
Nr1i3O35627 AC149294.4-201ENSMUST00000227870 882 ntBASIC15.09■□□□□ 0.01
Nr1i3O35627 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Nr1i3O35627 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nr1i3O35627 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
Nr1i3O35627 Il17rd-203ENSMUST00000225146 3366 ntBASIC15.08■□□□□ 0.01
Nr1i3O35627 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Nr1i3O35627 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
Nr1i3O35627 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Nr1i3O35627 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Nr1i3O35627 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC15.08■□□□□ 0
Nr1i3O35627 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC15.08■□□□□ 0
Nr1i3O35627 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1i3O35627 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC15.08■□□□□ 0
Nr1i3O35627 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1i3O35627 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC15.08■□□□□ 0
Nr1i3O35627 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
Nr1i3O35627 Gm25925-201ENSMUST00000158314 306 ntBASIC15.08■□□□□ 0
Nr1i3O35627 Gm9719-201ENSMUST00000162765 543 ntBASIC15.08■□□□□ 0
Nr1i3O35627 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC15.08■□□□□ 0
Nr1i3O35627 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC15.08■□□□□ 0
Nr1i3O35627 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1i3O35627 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1i3O35627 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1i3O35627 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC15.08■□□□□ 0
Nr1i3O35627 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1i3O35627 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Nr1i3O35627 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC15.08■□□□□ 0
Nr1i3O35627 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1i3O35627 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1i3O35627 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1i3O35627 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC15.08■□□□□ 0
Nr1i3O35627 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Nr1i3O35627 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1i3O35627 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Nr1i3O35627 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1i3O35627 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1i3O35627 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1i3O35627 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1i3O35627 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1i3O35627 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1i3O35627 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC15.07■□□□□ 0
Nr1i3O35627 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1i3O35627 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC15.07■□□□□ 0
Nr1i3O35627 Gm18766-201ENSMUST00000189811 808 ntBASIC15.07■□□□□ 0
Nr1i3O35627 Gm29541-201ENSMUST00000191351 678 ntBASIC15.07■□□□□ 0
Nr1i3O35627 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC15.07■□□□□ 0
Nr1i3O35627 Gm6443-201ENSMUST00000203599 874 ntBASIC15.07■□□□□ 0
Nr1i3O35627 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC15.07■□□□□ 0
Nr1i3O35627 Gm44771-201ENSMUST00000206975 626 ntBASIC15.07■□□□□ 0
Nr1i3O35627 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
Nr1i3O35627 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1i3O35627 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC15.07■□□□□ 0
Nr1i3O35627 Gm6198-201ENSMUST00000191337 2929 ntBASIC15.07■□□□□ 0
Nr1i3O35627 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Nr1i3O35627 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Nr1i3O35627 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Nr1i3O35627 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC15.07■□□□□ 0
Nr1i3O35627 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC15.07■□□□□ 0
Nr1i3O35627 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 64.2 ms