Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Rassf8-202ENSMUST00000058538 1131 ntBASIC13.73□□□□□ -0.21
Chd3B1AR17 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC13.73□□□□□ -0.21
Chd3B1AR17 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chd3B1AR17 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Chd3B1AR17 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chd3B1AR17 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chd3B1AR17 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chd3B1AR17 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chd3B1AR17 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC13.73□□□□□ -0.21
Chd3B1AR17 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
Chd3B1AR17 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chd3B1AR17 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Chd3B1AR17 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chd3B1AR17 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC13.73□□□□□ -0.21
Chd3B1AR17 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chd3B1AR17 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC13.73□□□□□ -0.21
Chd3B1AR17 Gm29741-201ENSMUST00000192667 421 ntBASIC13.73□□□□□ -0.21
Chd3B1AR17 Gm7558-201ENSMUST00000193221 1165 ntBASIC13.73□□□□□ -0.21
Chd3B1AR17 AC192088.1-201ENSMUST00000227561 301 ntBASIC13.73□□□□□ -0.21
Chd3B1AR17 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Chd3B1AR17 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chd3B1AR17 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chd3B1AR17 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Chd3B1AR17 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chd3B1AR17 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chd3B1AR17 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Chd3B1AR17 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Chd3B1AR17 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Chd3B1AR17 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Gm12485-201ENSMUST00000119641 291 ntBASIC13.72□□□□□ -0.21
Chd3B1AR17 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Gm8463-201ENSMUST00000208573 613 ntBASIC13.72□□□□□ -0.21
Chd3B1AR17 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Chd3B1AR17 AC166574.6-201ENSMUST00000227889 1806 ntBASIC13.72□□□□□ -0.21
Chd3B1AR17 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
Chd3B1AR17 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC13.72□□□□□ -0.21
Chd3B1AR17 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Chd3B1AR17 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC13.72□□□□□ -0.21
Chd3B1AR17 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Chd3B1AR17 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC13.71□□□□□ -0.21
Chd3B1AR17 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC13.71□□□□□ -0.21
Chd3B1AR17 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC13.71□□□□□ -0.21
Chd3B1AR17 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC13.71□□□□□ -0.21
Chd3B1AR17 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Gm19078-201ENSMUST00000206311 727 ntBASIC13.71□□□□□ -0.21
Chd3B1AR17 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC13.71□□□□□ -0.21
Chd3B1AR17 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Chd3B1AR17 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Chd3B1AR17 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Gm37714-201ENSMUST00000194742 342 ntBASIC13.71□□□□□ -0.21
Chd3B1AR17 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC13.71□□□□□ -0.21
Chd3B1AR17 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC13.71□□□□□ -0.21
Chd3B1AR17 Gm19220-201ENSMUST00000222682 803 ntBASIC13.71□□□□□ -0.21
Chd3B1AR17 AC139580.1-202ENSMUST00000223574 928 ntBASIC13.71□□□□□ -0.21
Chd3B1AR17 AC155252.1-201ENSMUST00000226462 1208 ntBASIC13.71□□□□□ -0.21
Chd3B1AR17 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Chd3B1AR17 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Chd3B1AR17 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Chd3B1AR17 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Chd3B1AR17 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Chd3B1AR17 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Chd3B1AR17 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Chd3B1AR17 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms