Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Gm15957-201ENSMUST00000118893 974 ntBASIC13.31□□□□□ -0.28
Clrn1Q8K445 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC13.31□□□□□ -0.28
Clrn1Q8K445 AC124732.2-201ENSMUST00000221977 316 ntBASIC13.31□□□□□ -0.28
Clrn1Q8K445 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 AC154767.3-201ENSMUST00000225150 1342 ntBASIC13.31□□□□□ -0.28
Clrn1Q8K445 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Clrn1Q8K445 Gm9109-201ENSMUST00000120254 1405 ntBASIC13.3□□□□□ -0.28
Clrn1Q8K445 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
Clrn1Q8K445 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 BC001981-202ENSMUST00000191393 1545 ntBASIC13.3□□□□□ -0.28
Clrn1Q8K445 Gm24543-201ENSMUST00000103867 82 ntBASIC13.3□□□□□ -0.28
Clrn1Q8K445 Gm7336-201ENSMUST00000107041 1232 ntBASIC13.3□□□□□ -0.28
Clrn1Q8K445 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Gm15693-201ENSMUST00000120470 637 ntBASIC13.3□□□□□ -0.28
Clrn1Q8K445 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC13.3□□□□□ -0.28
Clrn1Q8K445 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Gm8584-201ENSMUST00000171982 758 ntBASIC13.3□□□□□ -0.28
Clrn1Q8K445 Gm22175-201ENSMUST00000175007 78 ntBASIC13.3□□□□□ -0.28
Clrn1Q8K445 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Gm37171-201ENSMUST00000192636 1185 ntBASIC13.3□□□□□ -0.28
Clrn1Q8K445 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Clrn1Q8K445 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Clrn1Q8K445 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC13.29□□□□□ -0.28
Clrn1Q8K445 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Clrn1Q8K445 AC167013.2-201ENSMUST00000228520 2684 ntBASIC13.29□□□□□ -0.28
Clrn1Q8K445 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Clrn1Q8K445 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Clrn1Q8K445 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Clrn1Q8K445 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Clrn1Q8K445 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC13.29□□□□□ -0.28
Clrn1Q8K445 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Clrn1Q8K445 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Clrn1Q8K445 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Clrn1Q8K445 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Clrn1Q8K445 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Clrn1Q8K445 Gm13616-201ENSMUST00000120600 222 ntBASIC13.29□□□□□ -0.28
Clrn1Q8K445 AA543401-201ENSMUST00000164248 1269 ntBASIC13.29□□□□□ -0.28
Clrn1Q8K445 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Clrn1Q8K445 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC13.29□□□□□ -0.28
Clrn1Q8K445 Gm28630-201ENSMUST00000187806 498 ntBASIC13.29□□□□□ -0.28
Clrn1Q8K445 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Clrn1Q8K445 Dupd1-202ENSMUST00000224735 548 ntBASIC13.29□□□□□ -0.28
Clrn1Q8K445 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 176.6 ms