Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Cdh11P55288 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Cdh11P55288 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC12.84□□□□□ -0.35
Cdh11P55288 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC12.84□□□□□ -0.35
Cdh11P55288 Gm13616-201ENSMUST00000120600 222 ntBASIC12.84□□□□□ -0.35
Cdh11P55288 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC12.84□□□□□ -0.35
Cdh11P55288 Gm9726-201ENSMUST00000180321 678 ntBASIC12.84□□□□□ -0.35
Cdh11P55288 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Gm43125-201ENSMUST00000201724 730 ntBASIC12.84□□□□□ -0.35
Cdh11P55288 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC12.84□□□□□ -0.35
Cdh11P55288 Gm20553-201ENSMUST00000204205 844 ntBASIC12.84□□□□□ -0.35
Cdh11P55288 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC12.84□□□□□ -0.35
Cdh11P55288 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC12.84□□□□□ -0.35
Cdh11P55288 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC12.84□□□□□ -0.35
Cdh11P55288 CT025555.1-201ENSMUST00000225901 1217 ntBASIC12.84□□□□□ -0.35
Cdh11P55288 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC12.84□□□□□ -0.35
Cdh11P55288 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cdh11P55288 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Cdh11P55288 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
Cdh11P55288 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Cdh11P55288 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Cdh11P55288 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Cdh11P55288 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC12.83□□□□□ -0.36
Cdh11P55288 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Gm12017-201ENSMUST00000122453 1003 ntBASIC12.83□□□□□ -0.36
Cdh11P55288 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC12.83□□□□□ -0.36
Cdh11P55288 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC12.83□□□□□ -0.36
Cdh11P55288 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC12.83□□□□□ -0.36
Cdh11P55288 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC12.83□□□□□ -0.36
Cdh11P55288 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Cdh11P55288 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Gm45630-201ENSMUST00000210243 1911 ntBASIC12.83□□□□□ -0.36
Cdh11P55288 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Cdh11P55288 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC12.83□□□□□ -0.36
Cdh11P55288 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC12.83□□□□□ -0.36
Cdh11P55288 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cdh11P55288 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Gm2420-202ENSMUST00000202224 2249 ntBASIC12.82□□□□□ -0.36
Cdh11P55288 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC12.82□□□□□ -0.36
Cdh11P55288 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC12.82□□□□□ -0.36
Cdh11P55288 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC12.82□□□□□ -0.36
Cdh11P55288 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC12.82□□□□□ -0.36
Cdh11P55288 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC12.82□□□□□ -0.36
Cdh11P55288 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms