Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Shmt1P50431 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC14.87□□□□□ -0.03
Shmt1P50431 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC14.87□□□□□ -0.03
Shmt1P50431 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC14.87□□□□□ -0.03
Shmt1P50431 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Shmt1P50431 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC14.87□□□□□ -0.03
Shmt1P50431 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC14.87□□□□□ -0.03
Shmt1P50431 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
Shmt1P50431 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
Shmt1P50431 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
Shmt1P50431 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Shmt1P50431 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Shmt1P50431 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Shmt1P50431 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
Shmt1P50431 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Shmt1P50431 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC14.86□□□□□ -0.03
Shmt1P50431 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Shmt1P50431 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Shmt1P50431 Gm8584-201ENSMUST00000171982 758 ntBASIC14.86□□□□□ -0.03
Shmt1P50431 Gm6283-201ENSMUST00000182369 1000 ntBASIC14.86□□□□□ -0.03
Shmt1P50431 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC14.86□□□□□ -0.03
Shmt1P50431 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC14.86□□□□□ -0.03
Shmt1P50431 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Shmt1P50431 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
Shmt1P50431 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Shmt1P50431 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Shmt1P50431 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Shmt1P50431 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Shmt1P50431 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Shmt1P50431 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 Gm38042-201ENSMUST00000191614 5208 ntBASIC14.85□□□□□ -0.03
Shmt1P50431 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 AC148324.1-201ENSMUST00000219034 4240 ntBASIC14.85□□□□□ -0.03
Shmt1P50431 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 Gm45605-201ENSMUST00000210265 4269 ntBASIC14.85□□□□□ -0.03
Shmt1P50431 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Shmt1P50431 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Shmt1P50431 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
Shmt1P50431 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC14.85□□□□□ -0.03
Shmt1P50431 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 Gm9797-201ENSMUST00000052902 613 ntBASIC14.85□□□□□ -0.03
Shmt1P50431 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC14.85□□□□□ -0.03
Shmt1P50431 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Shmt1P50431 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Shmt1P50431 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms