Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Gm44291-201ENSMUST00000203102 2865 ntBASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Gm24543-201ENSMUST00000103867 82 ntBASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Gm28630-201ENSMUST00000187806 498 ntBASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Gm16476-201ENSMUST00000221544 139 ntBASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Gm43056-201ENSMUST00000197865 2791 ntBASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Ddx56Q9D0R4 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
Ddx56Q9D0R4 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Ddx56Q9D0R4 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
Ddx56Q9D0R4 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Ddx56Q9D0R4 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Ddx56Q9D0R4 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
Ddx56Q9D0R4 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Ddx56Q9D0R4 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.03
Ddx56Q9D0R4 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Ddx56Q9D0R4 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Ddx56Q9D0R4 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Gm7336-201ENSMUST00000107041 1232 ntBASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ddx56Q9D0R4 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Gm8410-201ENSMUST00000117225 605 ntBASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms