Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Gm6550-201ENSMUST00000187574 993 ntBASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Spr-ps1-201ENSMUST00000089584 605 ntBASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Ccdc28bQ8CEG5 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Ccdc28bQ8CEG5 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Ccdc28bQ8CEG5 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
Ccdc28bQ8CEG5 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Ccdc28bQ8CEG5 Nudt18-203ENSMUST00000228768 1578 ntBASIC13.96□□□□□ -0.18
Ccdc28bQ8CEG5 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
Ccdc28bQ8CEG5 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Ccdc28bQ8CEG5 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Ccdc28bQ8CEG5 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Gm45638-201ENSMUST00000211507 2878 ntBASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Gm37795-201ENSMUST00000194216 2459 ntBASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Acot6-202ENSMUST00000222921 3622 ntBASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Ccdc28bQ8CEG5 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Mir7071-201ENSMUST00000184847 69 ntBASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Ccdc28bQ8CEG5 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms