Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Mir698-201ENSMUST00000102164 109 ntBASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Gm27839-201ENSMUST00000184242 106 ntBASIC19.25■□□□□ 0.67
Usp40Q8BWR4 AC125350.2-201ENSMUST00000224737 727 ntBASIC19.25■□□□□ 0.67
Usp40Q8BWR4 AC110817.1-201ENSMUST00000225706 605 ntBASIC19.25■□□□□ 0.67
Usp40Q8BWR4 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Gm37812-201ENSMUST00000195216 2475 ntBASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Gm12928-201ENSMUST00000117115 573 ntBASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Gm12390-201ENSMUST00000117897 397 ntBASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Gm11425-201ENSMUST00000119608 498 ntBASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Gm14730-201ENSMUST00000122378 1045 ntBASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Gm7498-201ENSMUST00000203282 1084 ntBASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Gm9396-201ENSMUST00000076703 567 ntBASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Gm13859-201ENSMUST00000119936 1423 ntBASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Usp40Q8BWR4 AC114008.2-201ENSMUST00000227699 1347 ntBASIC19.24■□□□□ 0.67
Usp40Q8BWR4 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Gm38102-201ENSMUST00000192791 1935 ntBASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Gm3809-201ENSMUST00000180973 1006 ntBASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Gm7287-201ENSMUST00000205267 602 ntBASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Gm44799-201ENSMUST00000207639 1202 ntBASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Gm17794-201ENSMUST00000220252 955 ntBASIC19.23■□□□□ 0.67
Usp40Q8BWR4 AC166997.1-201ENSMUST00000225122 572 ntBASIC19.23■□□□□ 0.67
Usp40Q8BWR4 AC125117.1-201ENSMUST00000228121 468 ntBASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Gm9816-201ENSMUST00000122292 1414 ntBASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Usp40Q8BWR4 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Gm4984-201ENSMUST00000115987 360 ntBASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Gm16342-201ENSMUST00000124025 1025 ntBASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Gm5276-201ENSMUST00000196683 1047 ntBASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC19.22■□□□□ 0.67
Usp40Q8BWR4 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 57.7 ms