Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm21470-201ENSMUST00000187680 696 ntBASIC16.32■□□□□ 0.2
Traf1P39428 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Traf1P39428 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC16.32■□□□□ 0.2
Traf1P39428 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC16.32■□□□□ 0.2
Traf1P39428 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Traf1P39428 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Traf1P39428 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Traf1P39428 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Traf1P39428 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Traf1P39428 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Traf1P39428 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Traf1P39428 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Traf1P39428 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Traf1P39428 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Traf1P39428 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Traf1P39428 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Traf1P39428 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
Traf1P39428 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Traf1P39428 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC16.31■□□□□ 0.2
Traf1P39428 Ldb3-207ENSMUST00000227819 1499 ntBASIC16.31■□□□□ 0.2
Traf1P39428 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC16.31■□□□□ 0.2
Traf1P39428 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Traf1P39428 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC16.31■□□□□ 0.2
Traf1P39428 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC16.31■□□□□ 0.2
Traf1P39428 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC16.31■□□□□ 0.2
Traf1P39428 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC16.31■□□□□ 0.2
Traf1P39428 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Traf1P39428 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Traf1P39428 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Traf1P39428 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Traf1P39428 AC154239.3-201ENSMUST00000226933 674 ntBASIC16.31■□□□□ 0.2
Traf1P39428 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Traf1P39428 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Traf1P39428 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Traf1P39428 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Traf1P39428 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Traf1P39428 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Traf1P39428 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Traf1P39428 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Traf1P39428 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Traf1P39428 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Traf1P39428 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Traf1P39428 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Traf1P39428 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Traf1P39428 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC16.3■□□□□ 0.2
Traf1P39428 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC16.3■□□□□ 0.2
Traf1P39428 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Traf1P39428 Gm10766-202ENSMUST00000194123 606 ntBASIC16.3■□□□□ 0.2
Traf1P39428 Gm8515-201ENSMUST00000194852 576 ntBASIC16.3■□□□□ 0.2
Traf1P39428 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC16.3■□□□□ 0.2
Traf1P39428 Gm19220-201ENSMUST00000222682 803 ntBASIC16.3■□□□□ 0.2
Traf1P39428 AC102291.3-201ENSMUST00000226566 405 ntBASIC16.3■□□□□ 0.2
Traf1P39428 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Traf1P39428 Gm15823-201ENSMUST00000064305 670 ntBASIC16.3■□□□□ 0.2
Traf1P39428 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Traf1P39428 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Traf1P39428 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Traf1P39428 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Traf1P39428 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC16.3■□□□□ 0.2
Traf1P39428 Gm21451-201ENSMUST00000111062 2775 ntBASIC16.3■□□□□ 0.2
Traf1P39428 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Traf1P39428 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Traf1P39428 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Traf1P39428 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Traf1P39428 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Traf1P39428 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Traf1P39428 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Traf1P39428 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Traf1P39428 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Traf1P39428 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Traf1P39428 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC16.29■□□□□ 0.2
Traf1P39428 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Traf1P39428 Gm31326-201ENSMUST00000191856 1048 ntBASIC16.29■□□□□ 0.2
Traf1P39428 Gm9794-201ENSMUST00000202370 423 ntBASIC16.29■□□□□ 0.2
Traf1P39428 AC154687.2-201ENSMUST00000223853 640 ntBASIC16.29■□□□□ 0.2
Traf1P39428 AC154846.1-201ENSMUST00000226278 862 ntBASIC16.29■□□□□ 0.2
Traf1P39428 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Traf1P39428 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Traf1P39428 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms