Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Ddx56Q9D0R4 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Gm13517-201ENSMUST00000120782 1495 ntBASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Ddx56Q9D0R4 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Gm6415-201ENSMUST00000118488 348 ntBASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Gm15693-201ENSMUST00000120470 637 ntBASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ddx56Q9D0R4 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Gm14701-201ENSMUST00000117156 348 ntBASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Dupd1-202ENSMUST00000224735 548 ntBASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 AC139350.3-201ENSMUST00000226151 420 ntBASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 AC159649.2-201ENSMUST00000222984 3223 ntBASIC14.85□□□□□ -0.03
Ddx56Q9D0R4 Gm9347-201ENSMUST00000211473 1607 ntBASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Gm42471-201ENSMUST00000201457 1865 ntBASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Ddx56Q9D0R4 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms