Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Gm9908-201ENSMUST00000211534 448 ntBASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Sf3b1Q99NB9 AC167013.2-201ENSMUST00000228520 2684 ntBASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Gm10605-202ENSMUST00000183019 3198 ntBASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Ighv8-14-201ENSMUST00000196781 358 ntBASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Gm45384-201ENSMUST00000210451 277 ntBASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 AC155729.1-201ENSMUST00000227758 544 ntBASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Gm9856-201ENSMUST00000217077 2578 ntBASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Sf3b1Q99NB9 AC166574.6-201ENSMUST00000227889 1806 ntBASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Gm44608-201ENSMUST00000206827 855 ntBASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 AC155286.1-201ENSMUST00000218632 448 ntBASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Sf3b1Q99NB9 Gm14452-201ENSMUST00000118680 1632 ntBASIC14.96□□□□□ -0.02
Sf3b1Q99NB9 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.02
Sf3b1Q99NB9 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
Sf3b1Q99NB9 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Sf3b1Q99NB9 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Sf3b1Q99NB9 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms