Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Ccdc166-201ENSMUST00000182172 2584 ntBASIC12.82□□□□□ -0.36
Usf1Q61069 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC12.82□□□□□ -0.36
Usf1Q61069 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Usf1Q61069 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Usf1Q61069 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Gm15371-201ENSMUST00000117057 784 ntBASIC12.82□□□□□ -0.36
Usf1Q61069 Gm5187-201ENSMUST00000117317 991 ntBASIC12.82□□□□□ -0.36
Usf1Q61069 Gm5940-201ENSMUST00000117582 1068 ntBASIC12.82□□□□□ -0.36
Usf1Q61069 Gm15376-201ENSMUST00000122258 783 ntBASIC12.82□□□□□ -0.36
Usf1Q61069 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC12.82□□□□□ -0.36
Usf1Q61069 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC12.82□□□□□ -0.36
Usf1Q61069 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC12.82□□□□□ -0.36
Usf1Q61069 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC12.82□□□□□ -0.36
Usf1Q61069 Gm5069-202ENSMUST00000192714 1011 ntBASIC12.82□□□□□ -0.36
Usf1Q61069 Gm6983-201ENSMUST00000214912 628 ntBASIC12.82□□□□□ -0.36
Usf1Q61069 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Gm7399-201ENSMUST00000032395 858 ntBASIC12.82□□□□□ -0.36
Usf1Q61069 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Usf1Q61069 Gm10012-201ENSMUST00000078252 192 ntBASIC12.82□□□□□ -0.36
Usf1Q61069 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Usf1Q61069 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Usf1Q61069 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Usf1Q61069 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Usf1Q61069 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Usf1Q61069 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC12.82□□□□□ -0.36
Usf1Q61069 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Usf1Q61069 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Usf1Q61069 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
Usf1Q61069 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Usf1Q61069 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Usf1Q61069 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Usf1Q61069 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC12.81□□□□□ -0.36
Usf1Q61069 Gm13689-201ENSMUST00000119360 685 ntBASIC12.81□□□□□ -0.36
Usf1Q61069 Gm13385-201ENSMUST00000121089 220 ntBASIC12.81□□□□□ -0.36
Usf1Q61069 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC12.81□□□□□ -0.36
Usf1Q61069 Gm26464-201ENSMUST00000157094 305 ntBASIC12.81□□□□□ -0.36
Usf1Q61069 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC12.81□□□□□ -0.36
Usf1Q61069 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Gm43818-201ENSMUST00000200605 466 ntBASIC12.81□□□□□ -0.36
Usf1Q61069 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC12.81□□□□□ -0.36
Usf1Q61069 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC12.81□□□□□ -0.36
Usf1Q61069 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Dctn4-202ENSMUST00000223590 1530 ntBASIC12.81□□□□□ -0.36
Usf1Q61069 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Usf1Q61069 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Gm13050-201ENSMUST00000122149 1345 ntBASIC12.81□□□□□ -0.36
Usf1Q61069 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Usf1Q61069 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usf1Q61069 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usf1Q61069 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usf1Q61069 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usf1Q61069 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usf1Q61069 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Usf1Q61069 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usf1Q61069 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usf1Q61069 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Usf1Q61069 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Usf1Q61069 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms