Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC12.04□□□□□ -0.48
Col8a1Q00780 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC12.04□□□□□ -0.48
Col8a1Q00780 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC12.04□□□□□ -0.48
Col8a1Q00780 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC12.04□□□□□ -0.48
Col8a1Q00780 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC12.04□□□□□ -0.48
Col8a1Q00780 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC12.04□□□□□ -0.48
Col8a1Q00780 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC12.04□□□□□ -0.48
Col8a1Q00780 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC12.04□□□□□ -0.48
Col8a1Q00780 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC12.04□□□□□ -0.48
Col8a1Q00780 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Col8a1Q00780 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC12.04□□□□□ -0.48
Col8a1Q00780 Gm4691-201ENSMUST00000182339 1000 ntBASIC12.04□□□□□ -0.48
Col8a1Q00780 Gm8565-201ENSMUST00000183259 1014 ntBASIC12.04□□□□□ -0.48
Col8a1Q00780 Gm2451-201ENSMUST00000199447 999 ntBASIC12.04□□□□□ -0.48
Col8a1Q00780 Gm10290-201ENSMUST00000200451 999 ntBASIC12.04□□□□□ -0.48
Col8a1Q00780 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC12.04□□□□□ -0.48
Col8a1Q00780 Gm7561-201ENSMUST00000211203 886 ntBASIC12.04□□□□□ -0.48
Col8a1Q00780 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 AC159747.1-201ENSMUST00000219903 265 ntBASIC12.04□□□□□ -0.48
Col8a1Q00780 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Gm5763-201ENSMUST00000155951 1530 ntBASIC12.04□□□□□ -0.48
Col8a1Q00780 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Col8a1Q00780 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC12.04□□□□□ -0.48
Col8a1Q00780 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC12.04□□□□□ -0.48
Col8a1Q00780 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC12.04□□□□□ -0.48
Col8a1Q00780 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col8a1Q00780 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC12.03□□□□□ -0.48
Col8a1Q00780 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Col8a1Q00780 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC12.03□□□□□ -0.48
Col8a1Q00780 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 AC148324.1-201ENSMUST00000219034 4240 ntBASIC12.03□□□□□ -0.48
Col8a1Q00780 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Col8a1Q00780 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Col8a1Q00780 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC12.03□□□□□ -0.48
Col8a1Q00780 Gm27847-201ENSMUST00000183711 107 ntBASIC12.03□□□□□ -0.48
Col8a1Q00780 Gm27375-201ENSMUST00000183799 107 ntBASIC12.03□□□□□ -0.48
Col8a1Q00780 Gm3786-201ENSMUST00000202659 378 ntBASIC12.03□□□□□ -0.48
Col8a1Q00780 Gm18056-201ENSMUST00000207670 568 ntBASIC12.03□□□□□ -0.48
Col8a1Q00780 Gm18061-201ENSMUST00000208350 562 ntBASIC12.03□□□□□ -0.48
Col8a1Q00780 Gm18063-201ENSMUST00000208529 568 ntBASIC12.03□□□□□ -0.48
Col8a1Q00780 Gm18052-201ENSMUST00000208750 559 ntBASIC12.03□□□□□ -0.48
Col8a1Q00780 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC12.03□□□□□ -0.48
Col8a1Q00780 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Gm24526-201ENSMUST00000082921 158 ntBASIC12.03□□□□□ -0.48
Col8a1Q00780 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Col8a1Q00780 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Col8a1Q00780 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Ksr1-207ENSMUST00000226282 5260 ntBASIC12.03□□□□□ -0.48
Col8a1Q00780 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Col8a1Q00780 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC12.03□□□□□ -0.48
Col8a1Q00780 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC12.03□□□□□ -0.48
Col8a1Q00780 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col8a1Q00780 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC12.03□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms