Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC12.82□□□□□ -0.36
Lmx1bO88609 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Lmx1bO88609 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Lmx1bO88609 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Lmx1bO88609 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Gm7488-201ENSMUST00000117148 684 ntBASIC12.82□□□□□ -0.36
Lmx1bO88609 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Gm5745-201ENSMUST00000183748 313 ntBASIC12.82□□□□□ -0.36
Lmx1bO88609 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC12.82□□□□□ -0.36
Lmx1bO88609 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Lmx1bO88609 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC12.82□□□□□ -0.36
Lmx1bO88609 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC12.82□□□□□ -0.36
Lmx1bO88609 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC12.82□□□□□ -0.36
Lmx1bO88609 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Lmx1bO88609 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Gm3365-201ENSMUST00000216296 1480 ntBASIC12.82□□□□□ -0.36
Lmx1bO88609 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Gm44645-201ENSMUST00000205492 1653 ntBASIC12.82□□□□□ -0.36
Lmx1bO88609 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC12.82□□□□□ -0.36
Lmx1bO88609 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
Lmx1bO88609 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Lmx1bO88609 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC12.81□□□□□ -0.36
Lmx1bO88609 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC12.81□□□□□ -0.36
Lmx1bO88609 AC148324.1-201ENSMUST00000219034 4240 ntBASIC12.81□□□□□ -0.36
Lmx1bO88609 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC12.81□□□□□ -0.36
Lmx1bO88609 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Lmx1bO88609 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC12.81□□□□□ -0.36
Lmx1bO88609 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
Lmx1bO88609 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 AC135669.1-201ENSMUST00000213585 412 ntBASIC12.81□□□□□ -0.36
Lmx1bO88609 Arhgef33-209ENSMUST00000225223 714 ntBASIC12.81□□□□□ -0.36
Lmx1bO88609 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Lmx1bO88609 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC12.81□□□□□ -0.36
Lmx1bO88609 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Lmx1bO88609 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Lmx1bO88609 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 Gm45751-201ENSMUST00000210185 1573 ntBASIC12.81□□□□□ -0.36
Lmx1bO88609 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Lmx1bO88609 Gm9252-201ENSMUST00000172364 1602 ntBASIC12.8□□□□□ -0.36
Lmx1bO88609 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC12.8□□□□□ -0.36
Lmx1bO88609 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC12.8□□□□□ -0.36
Lmx1bO88609 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Lmx1bO88609 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC12.8□□□□□ -0.36
Lmx1bO88609 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
Lmx1bO88609 Gm11424-201ENSMUST00000121929 829 ntBASIC12.8□□□□□ -0.36
Lmx1bO88609 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Lmx1bO88609 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms