Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Gm6916-202ENSMUST00000205523 195 ntBASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Gm44608-201ENSMUST00000206827 855 ntBASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Gm28182-201ENSMUST00000188354 2477 ntBASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Gm21451-201ENSMUST00000111062 2775 ntBASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Gm17837-201ENSMUST00000186435 985 ntBASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Ighv8-14-201ENSMUST00000196781 358 ntBASIC17.09■□□□□ 0.33
Brf1Q8CFK2 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 AC121804.3-201ENSMUST00000223420 295 ntBASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Brf1Q8CFK2 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Brf1Q8CFK2 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Brf1Q8CFK2 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.33
Brf1Q8CFK2 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Brf1Q8CFK2 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Brf1Q8CFK2 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Brf1Q8CFK2 AC126549.2-201ENSMUST00000223997 1976 ntBASIC17.08■□□□□ 0.33
Brf1Q8CFK2 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Brf1Q8CFK2 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Gm43056-201ENSMUST00000197865 2791 ntBASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Gm9347-201ENSMUST00000211473 1607 ntBASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
Brf1Q8CFK2 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms