Protein–RNA interactions for Protein: Q8BZT2

Sh3rf2, Putative E3 ubiquitin-protein ligase SH3RF2, mousemouse

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf2Q8BZT2 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf2Q8BZT2 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC14.34□□□□□ -0.11
Sh3rf2Q8BZT2 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Sh3rf2Q8BZT2 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf2Q8BZT2 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Sh3rf2Q8BZT2 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC14.34□□□□□ -0.11
Sh3rf2Q8BZT2 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf2Q8BZT2 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf2Q8BZT2 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Sh3rf2Q8BZT2 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC14.34□□□□□ -0.11
Sh3rf2Q8BZT2 Gm42690-201ENSMUST00000197921 1836 ntBASIC14.34□□□□□ -0.11
Sh3rf2Q8BZT2 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Sh3rf2Q8BZT2 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf2Q8BZT2 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sh3rf2Q8BZT2 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sh3rf2Q8BZT2 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sh3rf2Q8BZT2 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Sh3rf2Q8BZT2 Gm9109-201ENSMUST00000120254 1405 ntBASIC14.33□□□□□ -0.11
Sh3rf2Q8BZT2 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Sh3rf2Q8BZT2 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Sh3rf2Q8BZT2 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 AC148324.1-201ENSMUST00000219034 4240 ntBASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Gm45384-201ENSMUST00000210451 277 ntBASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf2Q8BZT2 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC14.32□□□□□ -0.12
Sh3rf2Q8BZT2 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Gm11478-201ENSMUST00000117851 599 ntBASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Gm5279-201ENSMUST00000199575 745 ntBASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Gm45630-201ENSMUST00000210243 1911 ntBASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf2Q8BZT2 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 61.4 ms