Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Limch1Q3UH68 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Limch1Q3UH68 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Limch1Q3UH68 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Limch1Q3UH68 Gm13453-201ENSMUST00000118708 357 ntBASIC16.68■□□□□ 0.26
Limch1Q3UH68 Mir8102-201ENSMUST00000184148 139 ntBASIC16.68■□□□□ 0.26
Limch1Q3UH68 Gm44487-201ENSMUST00000205145 325 ntBASIC16.68■□□□□ 0.26
Limch1Q3UH68 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Limch1Q3UH68 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Limch1Q3UH68 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Limch1Q3UH68 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Limch1Q3UH68 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Limch1Q3UH68 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Limch1Q3UH68 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Limch1Q3UH68 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC16.68■□□□□ 0.26
Limch1Q3UH68 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Limch1Q3UH68 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Limch1Q3UH68 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Limch1Q3UH68 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC16.68■□□□□ 0.26
Limch1Q3UH68 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Gm6159-201ENSMUST00000191249 1724 ntBASIC16.67■□□□□ 0.26
Limch1Q3UH68 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Limch1Q3UH68 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC16.67■□□□□ 0.26
Limch1Q3UH68 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC16.67■□□□□ 0.26
Limch1Q3UH68 Rbfox2-208ENSMUST00000227930 1218 ntBASIC16.67■□□□□ 0.26
Limch1Q3UH68 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Limch1Q3UH68 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC16.66■□□□□ 0.26
Limch1Q3UH68 AC166574.6-201ENSMUST00000227889 1806 ntBASIC16.66■□□□□ 0.26
Limch1Q3UH68 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Gm8410-201ENSMUST00000117225 605 ntBASIC16.66■□□□□ 0.26
Limch1Q3UH68 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Gm18049-201ENSMUST00000208909 581 ntBASIC16.66■□□□□ 0.26
Limch1Q3UH68 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Gm38042-201ENSMUST00000191614 5208 ntBASIC16.66■□□□□ 0.26
Limch1Q3UH68 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC16.66■□□□□ 0.26
Limch1Q3UH68 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Limch1Q3UH68 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Limch1Q3UH68 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Limch1Q3UH68 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
Limch1Q3UH68 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Limch1Q3UH68 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Limch1Q3UH68 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Limch1Q3UH68 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC16.65■□□□□ 0.26
Limch1Q3UH68 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Limch1Q3UH68 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Limch1Q3UH68 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Limch1Q3UH68 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Limch1Q3UH68 Gm13015-201ENSMUST00000118674 204 ntBASIC16.65■□□□□ 0.26
Limch1Q3UH68 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Limch1Q3UH68 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Limch1Q3UH68 Gm8116-201ENSMUST00000182917 1201 ntBASIC16.65■□□□□ 0.26
Limch1Q3UH68 Gm29541-201ENSMUST00000191351 678 ntBASIC16.65■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms