Protein–RNA interactions for Protein: Q02788

Col6a2, Collagen alpha-2(VI) chain, mousemouse

Predictions only

Length 1,034 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a2Q02788 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Col6a2Q02788 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC14.13□□□□□ -0.15
Col6a2Q02788 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC14.13□□□□□ -0.15
Col6a2Q02788 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Col6a2Q02788 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Col6a2Q02788 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
Col6a2Q02788 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC14.13□□□□□ -0.15
Col6a2Q02788 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Col6a2Q02788 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Col6a2Q02788 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Col6a2Q02788 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Col6a2Q02788 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC14.13□□□□□ -0.15
Col6a2Q02788 Gm38042-201ENSMUST00000191614 5208 ntBASIC14.13□□□□□ -0.15
Col6a2Q02788 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Col6a2Q02788 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col6a2Q02788 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Col6a2Q02788 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Col6a2Q02788 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
Col6a2Q02788 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC14.12□□□□□ -0.15
Col6a2Q02788 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Col6a2Q02788 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Col6a2Q02788 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC14.12□□□□□ -0.15
Col6a2Q02788 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC14.12□□□□□ -0.15
Col6a2Q02788 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC14.12□□□□□ -0.15
Col6a2Q02788 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC14.12□□□□□ -0.15
Col6a2Q02788 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
Col6a2Q02788 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
Col6a2Q02788 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC14.12□□□□□ -0.15
Col6a2Q02788 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Col6a2Q02788 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Col6a2Q02788 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Col6a2Q02788 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Col6a2Q02788 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col6a2Q02788 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a2Q02788 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a2Q02788 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
Col6a2Q02788 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Col6a2Q02788 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Col6a2Q02788 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a2Q02788 Gm12585-201ENSMUST00000117307 290 ntBASIC14.11□□□□□ -0.15
Col6a2Q02788 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC14.11□□□□□ -0.15
Col6a2Q02788 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Col6a2Q02788 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC14.11□□□□□ -0.15
Col6a2Q02788 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a2Q02788 Gm26787-201ENSMUST00000180474 608 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a2Q02788 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC14.11□□□□□ -0.15
Col6a2Q02788 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a2Q02788 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a2Q02788 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a2Q02788 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Col6a2Q02788 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col6a2Q02788 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms