Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Ighv8-7-201ENSMUST00000194349 297 ntBASIC15.31■□□□□ 0.04
RaraP11416 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
RaraP11416 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC15.31■□□□□ 0.04
RaraP11416 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
RaraP11416 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
RaraP11416 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
RaraP11416 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RaraP11416 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
RaraP11416 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Gm11779-201ENSMUST00000118541 368 ntBASIC15.3■□□□□ 0.04
RaraP11416 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Gm12017-201ENSMUST00000122453 1003 ntBASIC15.3■□□□□ 0.04
RaraP11416 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC15.3■□□□□ 0.04
RaraP11416 Gm17271-201ENSMUST00000165535 355 ntBASIC15.3■□□□□ 0.04
RaraP11416 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC15.3■□□□□ 0.04
RaraP11416 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RaraP11416 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Gm9347-201ENSMUST00000211473 1607 ntBASIC15.3■□□□□ 0.04
RaraP11416 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Gm10175-201ENSMUST00000086013 645 ntBASIC15.3■□□□□ 0.04
RaraP11416 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC15.3■□□□□ 0.04
RaraP11416 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
RaraP11416 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
RaraP11416 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC15.3■□□□□ 0.04
RaraP11416 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC15.3■□□□□ 0.04
RaraP11416 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RaraP11416 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
RaraP11416 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
RaraP11416 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC15.29■□□□□ 0.04
RaraP11416 Gm2810-201ENSMUST00000118681 990 ntBASIC15.29■□□□□ 0.04
RaraP11416 Gm14494-201ENSMUST00000118786 435 ntBASIC15.29■□□□□ 0.04
RaraP11416 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC15.29■□□□□ 0.04
RaraP11416 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC15.29■□□□□ 0.04
RaraP11416 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC15.29■□□□□ 0.04
RaraP11416 Gm18057-201ENSMUST00000208220 503 ntBASIC15.29■□□□□ 0.04
RaraP11416 Gm45683-201ENSMUST00000210825 1247 ntBASIC15.29■□□□□ 0.04
RaraP11416 AC158529.1-201ENSMUST00000223618 239 ntBASIC15.29■□□□□ 0.04
RaraP11416 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC15.29■□□□□ 0.04
RaraP11416 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RaraP11416 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC15.28■□□□□ 0.04
RaraP11416 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RaraP11416 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RaraP11416 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RaraP11416 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC15.28■□□□□ 0.04
RaraP11416 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC15.28■□□□□ 0.04
RaraP11416 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
RaraP11416 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
RaraP11416 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
RaraP11416 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC15.28■□□□□ 0.04
RaraP11416 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC15.28■□□□□ 0.04
RaraP11416 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC15.28■□□□□ 0.04
RaraP11416 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC15.28■□□□□ 0.04
RaraP11416 Gm45612-201ENSMUST00000211320 160 ntBASIC15.28■□□□□ 0.04
RaraP11416 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC15.28■□□□□ 0.04
RaraP11416 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
RaraP11416 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RaraP11416 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RaraP11416 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RaraP11416 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms