Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Hoxd3P09027 Gm4204-201ENSMUST00000110798 1231 ntBASIC11.07□□□□□ -0.64
Hoxd3P09027 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Gm10275-202ENSMUST00000168697 495 ntBASIC11.07□□□□□ -0.64
Hoxd3P09027 Esp15-201ENSMUST00000178929 1168 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Gm27437-201ENSMUST00000183429 107 ntBASIC11.07□□□□□ -0.64
Hoxd3P09027 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC11.07□□□□□ -0.64
Hoxd3P09027 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC11.07□□□□□ -0.64
Hoxd3P09027 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC11.07□□□□□ -0.64
Hoxd3P09027 CT025535.1-201ENSMUST00000227172 491 ntBASIC11.07□□□□□ -0.64
Hoxd3P09027 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Hoxd3P09027 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Mir125a-201ENSMUST00000083545 68 ntBASIC11.07□□□□□ -0.64
Hoxd3P09027 Gm10275-201ENSMUST00000092620 635 ntBASIC11.07□□□□□ -0.64
Hoxd3P09027 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC11.07□□□□□ -0.64
Hoxd3P09027 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC11.07□□□□□ -0.64
Hoxd3P09027 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Hoxd3P09027 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
Hoxd3P09027 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Gm45751-201ENSMUST00000210185 1573 ntBASIC11.07□□□□□ -0.64
Hoxd3P09027 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Gm45657-201ENSMUST00000211318 1349 ntBASIC11.07□□□□□ -0.64
Hoxd3P09027 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Hoxd3P09027 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Hoxd3P09027 AC148324.1-201ENSMUST00000219034 4240 ntBASIC11.06□□□□□ -0.64
Hoxd3P09027 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
Hoxd3P09027 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Gm5357-201ENSMUST00000212720 1924 ntBASIC11.06□□□□□ -0.64
Hoxd3P09027 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC11.06□□□□□ -0.64
Hoxd3P09027 Gm11077-201ENSMUST00000111844 84 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Hoxd3P09027 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Gm14042-201ENSMUST00000120139 833 ntBASIC11.06□□□□□ -0.64
Hoxd3P09027 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Gm29013-201ENSMUST00000187431 237 ntBASIC11.06□□□□□ -0.64
Hoxd3P09027 Gm9723-201ENSMUST00000192100 457 ntBASIC11.06□□□□□ -0.64
Hoxd3P09027 Gm32877-201ENSMUST00000197419 709 ntTSL 5 BASIC11.06□□□□□ -0.64
Hoxd3P09027 AC125539.1-201ENSMUST00000227423 622 ntBASIC11.06□□□□□ -0.64
Hoxd3P09027 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
Hoxd3P09027 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Hoxd3P09027 Gm29644-201ENSMUST00000189003 1341 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Hoxd3P09027 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
Hoxd3P09027 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Hoxd3P09027 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC11.05□□□□□ -0.64
Hoxd3P09027 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Hoxd3P09027 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC11.05□□□□□ -0.64
Hoxd3P09027 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Hoxd3P09027 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Hoxd3P09027 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms