Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Chd3B1AR17 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Gm37411-201ENSMUST00000194180 2282 ntBASIC13.85□□□□□ -0.19
Chd3B1AR17 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC13.85□□□□□ -0.19
Chd3B1AR17 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC13.85□□□□□ -0.19
Chd3B1AR17 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Chd3B1AR17 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC13.85□□□□□ -0.19
Chd3B1AR17 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Chd3B1AR17 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Chd3B1AR17 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Chd3B1AR17 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC13.84□□□□□ -0.19
Chd3B1AR17 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC13.84□□□□□ -0.19
Chd3B1AR17 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC13.84□□□□□ -0.19
Chd3B1AR17 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Chd3B1AR17 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Chd3B1AR17 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC13.84□□□□□ -0.19
Chd3B1AR17 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC13.84□□□□□ -0.19
Chd3B1AR17 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Chd3B1AR17 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Chd3B1AR17 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Chd3B1AR17 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Chd3B1AR17 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Chd3B1AR17 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Chd3B1AR17 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Chd3B1AR17 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Chd3B1AR17 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Gm15678-201ENSMUST00000117573 960 ntBASIC13.83□□□□□ -0.2
Chd3B1AR17 Gm11918-201ENSMUST00000121660 179 ntBASIC13.83□□□□□ -0.2
Chd3B1AR17 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
Chd3B1AR17 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Chd3B1AR17 Gm5425-201ENSMUST00000214125 459 ntBASIC13.83□□□□□ -0.2
Chd3B1AR17 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Chd3B1AR17 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Chd3B1AR17 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 AC126549.2-201ENSMUST00000223997 1976 ntBASIC13.83□□□□□ -0.2
Chd3B1AR17 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
Chd3B1AR17 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC13.83□□□□□ -0.2
Chd3B1AR17 Ldha-ps-201ENSMUST00000119390 995 ntBASIC13.83□□□□□ -0.2
Chd3B1AR17 Gm44981-201ENSMUST00000205549 1943 ntBASIC13.83□□□□□ -0.2
Chd3B1AR17 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC13.82□□□□□ -0.2
Chd3B1AR17 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Chd3B1AR17 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Chd3B1AR17 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC13.82□□□□□ -0.2
Chd3B1AR17 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Chd3B1AR17 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Chd3B1AR17 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Chd3B1AR17 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Chd3B1AR17 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms