Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Scn4aQ9ER60 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Gm24749-201ENSMUST00000157838 343 ntBASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Gm9004-201ENSMUST00000218739 1222 ntBASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Gm14780-201ENSMUST00000118387 2737 ntBASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Scn4aQ9ER60 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Gm5070-201ENSMUST00000177599 862 ntBASIC18.9■□□□□ 0.62
Scn4aQ9ER60 AC161537.1-201ENSMUST00000226199 1015 ntBASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Gm10179-201ENSMUST00000086233 688 ntBASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Gm26185-201ENSMUST00000157692 266 ntBASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Fabp6-201ENSMUST00000020672 479 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Gm32025-201ENSMUST00000217960 307 ntBASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC18.9■□□□□ 0.62
Scn4aQ9ER60 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Scn4aQ9ER60 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Gm26361-201ENSMUST00000158868 186 ntBASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Ntng1-201ENSMUST00000051253 327 ntBASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Scn4aQ9ER60 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Gm27552-201ENSMUST00000183351 62 ntBASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Gm27844-201ENSMUST00000183613 62 ntBASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Gm4768-201ENSMUST00000206199 686 ntBASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Gm44069-201ENSMUST00000204898 506 ntBASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Gm8913-201ENSMUST00000209491 641 ntBASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Scn4aQ9ER60 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms