Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Gm37861-201ENSMUST00000193534 2869 ntBASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Gm12260-201ENSMUST00000122447 411 ntBASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Ddx28Q9CWT6 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx28Q9CWT6 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Gm27525-201ENSMUST00000184465 107 ntBASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Gm8000-201ENSMUST00000188378 592 ntBASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Ddx28Q9CWT6 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 70.5 ms