Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Gm45667-201ENSMUST00000210380 1316 ntBASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC17.14■□□□□ 0.33
Brf1Q8CFK2 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Brf1Q8CFK2 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Gm25144-201ENSMUST00000179561 110 ntBASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Gm25352-201ENSMUST00000179815 110 ntBASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
Brf1Q8CFK2 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Gm13223-201ENSMUST00000118609 747 ntBASIC17.11■□□□□ 0.33
Brf1Q8CFK2 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 AA543401-201ENSMUST00000164248 1269 ntBASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Mir6956-201ENSMUST00000183598 62 ntBASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Gm6888-201ENSMUST00000221983 706 ntBASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Brf1Q8CFK2 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Brf1Q8CFK2 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms