Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Usp40Q8BWR4 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Gm44981-201ENSMUST00000205549 1943 ntBASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Gm9347-201ENSMUST00000211473 1607 ntBASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 AC192088.1-201ENSMUST00000227561 301 ntBASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Usp40Q8BWR4 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 AC126549.2-201ENSMUST00000223997 1976 ntBASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Gm27892-201ENSMUST00000185017 106 ntBASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Gm44719-201ENSMUST00000206404 149 ntBASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Usp40Q8BWR4 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Gm26464-201ENSMUST00000157094 305 ntBASIC19.35■□□□□ 0.69
Usp40Q8BWR4 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Usp40Q8BWR4 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Gm6244-201ENSMUST00000178732 841 ntBASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Gm4971-201ENSMUST00000205991 1108 ntBASIC19.34■□□□□ 0.69
Usp40Q8BWR4 CT030704.2-201ENSMUST00000228887 494 ntBASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Usp40Q8BWR4 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms