Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Cux1P53564 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Cux1P53564 Gm42550-201ENSMUST00000201553 960 ntBASIC21.48■■□□□ 1.03
Cux1P53564 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC21.48■■□□□ 1.03
Cux1P53564 Gm6013-201ENSMUST00000212264 699 ntBASIC21.48■■□□□ 1.03
Cux1P53564 Gm19309-201ENSMUST00000218295 205 ntBASIC21.48■■□□□ 1.03
Cux1P53564 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Cux1P53564 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
Cux1P53564 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC21.48■■□□□ 1.03
Cux1P53564 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Cux1P53564 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
Cux1P53564 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
Cux1P53564 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Cux1P53564 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cux1P53564 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Cux1P53564 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cux1P53564 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cux1P53564 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
Cux1P53564 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC21.47■■□□□ 1.03
Cux1P53564 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Cux1P53564 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
Cux1P53564 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cux1P53564 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cux1P53564 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Cux1P53564 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
Cux1P53564 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC21.47■■□□□ 1.03
Cux1P53564 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC21.47■■□□□ 1.03
Cux1P53564 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cux1P53564 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Cux1P53564 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Cux1P53564 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cux1P53564 AC162938.1-201ENSMUST00000213140 2323 ntBASIC21.47■■□□□ 1.03
Cux1P53564 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC21.47■■□□□ 1.03
Cux1P53564 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Cux1P53564 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Cux1P53564 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Cux1P53564 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Gm20632-201ENSMUST00000176760 2427 ntBASIC21.46■■□□□ 1.03
Cux1P53564 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
Cux1P53564 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Gm11793-201ENSMUST00000120433 981 ntBASIC21.46■■□□□ 1.03
Cux1P53564 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC21.46■■□□□ 1.03
Cux1P53564 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC21.46■■□□□ 1.03
Cux1P53564 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC21.46■■□□□ 1.03
Cux1P53564 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Gm9755-201ENSMUST00000032981 1356 ntBASIC21.46■■□□□ 1.03
Cux1P53564 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC21.46■■□□□ 1.03
Cux1P53564 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Gm8706-201ENSMUST00000197372 1491 ntBASIC21.46■■□□□ 1.03
Cux1P53564 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC21.46■■□□□ 1.03
Cux1P53564 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Cux1P53564 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cux1P53564 Gm1335-201ENSMUST00000121653 386 ntBASIC21.45■■□□□ 1.02
Cux1P53564 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Cux1P53564 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Cux1P53564 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC21.45■■□□□ 1.02
Cux1P53564 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC21.45■■□□□ 1.02
Cux1P53564 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Cux1P53564 Gm17330-201ENSMUST00000221047 165 ntBASIC21.45■■□□□ 1.02
Cux1P53564 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC21.45■■□□□ 1.02
Cux1P53564 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cux1P53564 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cux1P53564 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Cux1P53564 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cux1P53564 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cux1P53564 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cux1P53564 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cux1P53564 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cux1P53564 Gm16425-201ENSMUST00000118143 3130 ntBASIC21.45■■□□□ 1.02
Cux1P53564 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cux1P53564 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC21.45■■□□□ 1.02
Cux1P53564 Gm13886-201ENSMUST00000117876 1183 ntBASIC21.45■■□□□ 1.02
Cux1P53564 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC21.45■■□□□ 1.02
Cux1P53564 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Cux1P53564 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC21.45■■□□□ 1.02
Cux1P53564 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC21.45■■□□□ 1.02
Cux1P53564 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cux1P53564 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cux1P53564 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC21.44■■□□□ 1.02
Cux1P53564 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cux1P53564 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cux1P53564 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cux1P53564 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC21.44■■□□□ 1.02
Cux1P53564 Gm5620-201ENSMUST00000077991 1348 ntBASIC21.44■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms