Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Prpf40aQ9R1C7 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Prpf40aQ9R1C7 Gm8396-201ENSMUST00000057361 823 ntBASIC15.67■□□□□ 0.1
Prpf40aQ9R1C7 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Prpf40aQ9R1C7 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Prpf40aQ9R1C7 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Prpf40aQ9R1C7 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Prpf40aQ9R1C7 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Prpf40aQ9R1C7 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Prpf40aQ9R1C7 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Prpf40aQ9R1C7 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 CT025626.1-201ENSMUST00000223735 1455 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm22065-201ENSMUST00000103753 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm22066-201ENSMUST00000103761 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm24932-201ENSMUST00000103763 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm24115-201ENSMUST00000103799 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm22190-201ENSMUST00000103827 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm22191-201ENSMUST00000103831 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm24721-201ENSMUST00000103849 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm28018-201ENSMUST00000103869 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm26399-201ENSMUST00000103937 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm14042-201ENSMUST00000120139 833 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm25349-201ENSMUST00000177728 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm23616-201ENSMUST00000177797 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm25871-201ENSMUST00000177816 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm24752-201ENSMUST00000178240 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm24496-201ENSMUST00000178287 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm25649-201ENSMUST00000178476 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm25548-201ENSMUST00000178681 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm23147-201ENSMUST00000178841 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm26095-201ENSMUST00000179270 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm22171-201ENSMUST00000179283 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm23936-201ENSMUST00000179354 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm22619-201ENSMUST00000179516 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm25255-201ENSMUST00000179579 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm24755-201ENSMUST00000179691 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm26506-201ENSMUST00000179692 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm25086-201ENSMUST00000179931 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm23243-201ENSMUST00000180047 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm24659-201ENSMUST00000180212 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm24169-201ENSMUST00000180244 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm23689-201ENSMUST00000180354 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm27359-201ENSMUST00000184153 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm27785-201ENSMUST00000184268 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm27466-201ENSMUST00000184396 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm27703-201ENSMUST00000184836 110 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Gm42466-201ENSMUST00000202099 1301 ntBASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Prpf40aQ9R1C7 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Gm6756-201ENSMUST00000180647 1620 ntBASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Gm5312-201ENSMUST00000203728 547 ntBASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Gm44711-201ENSMUST00000205414 1264 ntBASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 A430010J10Rik-201ENSMUST00000054470 408 ntBASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms