Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Il17rd-203ENSMUST00000225146 3366 ntBASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lima1Q9ERG0 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Gm8749-201ENSMUST00000117737 331 ntBASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Lima1Q9ERG0 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Gm1401-201ENSMUST00000122048 772 ntBASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Gm2272-201ENSMUST00000194903 582 ntBASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Gm38094-201ENSMUST00000195864 2978 ntBASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Gm18244-201ENSMUST00000219747 1566 ntBASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Gm37844-201ENSMUST00000192473 4097 ntBASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Lima1Q9ERG0 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Gm15593-201ENSMUST00000122085 1008 ntBASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Lima1Q9ERG0 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms