Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps28Q9D1C8 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps28Q9D1C8 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
Vps28Q9D1C8 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.58□□□□□ -0.07
Vps28Q9D1C8 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Mir1897-201ENSMUST00000122581 272 ntBASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Gm44344-201ENSMUST00000200287 129 ntBASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Dupd1-202ENSMUST00000224735 548 ntBASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Shd-206ENSMUST00000225145 998 ntBASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps28Q9D1C8 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Gm14057-201ENSMUST00000120631 482 ntBASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Gm16476-201ENSMUST00000221544 139 ntBASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Vps28Q9D1C8 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Gm12151-201ENSMUST00000121374 290 ntBASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Gm38042-201ENSMUST00000191614 5208 ntBASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Gm45751-201ENSMUST00000210185 1573 ntBASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps28Q9D1C8 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms