Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Cdk5rap3Q99LM2 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC14.74□□□□□ -0.05
Cdk5rap3Q99LM2 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdk5rap3Q99LM2 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Mzt1-203ENSMUST00000227948 952 ntBASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 AC123645.1-201ENSMUST00000228469 605 ntBASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Gm42769-201ENSMUST00000198576 1659 ntBASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdk5rap3Q99LM2 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Gm44492-201ENSMUST00000197012 141 ntBASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 CT030684.1-201ENSMUST00000227292 914 ntBASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdk5rap3Q99LM2 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Gm43332-201ENSMUST00000202511 1044 ntBASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdk5rap3Q99LM2 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Cdk5rap3Q99LM2 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
Cdk5rap3Q99LM2 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC14.71□□□□□ -0.06
Cdk5rap3Q99LM2 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC14.71□□□□□ -0.06
Cdk5rap3Q99LM2 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Gm9727-201ENSMUST00000161387 555 ntBASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Gm5763-201ENSMUST00000155951 1530 ntBASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC14.7□□□□□ -0.06
Cdk5rap3Q99LM2 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms