Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Gm2495-201ENSMUST00000191160 466 ntBASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Gm19078-201ENSMUST00000206311 727 ntBASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Gm14451-201ENSMUST00000121581 1542 ntBASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Gm12390-201ENSMUST00000117897 397 ntBASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Mir1938-201ENSMUST00000158746 100 ntBASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Gm43094-201ENSMUST00000196549 921 ntBASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Gm44799-201ENSMUST00000207639 1202 ntBASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Gm7067-201ENSMUST00000207698 1249 ntBASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Gm38037-201ENSMUST00000192600 1624 ntBASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3aQ3ULJ3 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Mir1982-201ENSMUST00000157368 74 ntBASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Gm8463-201ENSMUST00000208573 613 ntBASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 AC110817.1-201ENSMUST00000225706 605 ntBASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 AC155729.1-201ENSMUST00000227758 544 ntBASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Gm9109-201ENSMUST00000120254 1405 ntBASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Upf3aQ3ULJ3 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Upf3aQ3ULJ3 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms