Protein–RNA interactions for Protein: Q08624

Hoxc4, Homeobox protein Hox-C4, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxc4Q08624 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hoxc4Q08624 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hoxc4Q08624 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hoxc4Q08624 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hoxc4Q08624 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC13.62□□□□□ -0.23
Hoxc4Q08624 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hoxc4Q08624 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hoxc4Q08624 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Hoxc4Q08624 AC154527.2-201ENSMUST00000225256 1466 ntBASIC13.61□□□□□ -0.23
Hoxc4Q08624 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Gm9347-201ENSMUST00000211473 1607 ntBASIC13.61□□□□□ -0.23
Hoxc4Q08624 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Gm27772-201ENSMUST00000184900 187 ntBASIC13.61□□□□□ -0.23
Hoxc4Q08624 Mir7654-201ENSMUST00000185082 70 ntBASIC13.61□□□□□ -0.23
Hoxc4Q08624 Gm9908-201ENSMUST00000211534 448 ntBASIC13.61□□□□□ -0.23
Hoxc4Q08624 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Gm45546-201ENSMUST00000211053 2394 ntBASIC13.61□□□□□ -0.23
Hoxc4Q08624 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Hoxc4Q08624 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Hoxc4Q08624 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Gm12620-201ENSMUST00000119791 1986 ntBASIC13.6□□□□□ -0.23
Hoxc4Q08624 Gm12612-201ENSMUST00000140182 1986 ntBASIC13.6□□□□□ -0.23
Hoxc4Q08624 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Mir698-201ENSMUST00000102164 109 ntBASIC13.6□□□□□ -0.23
Hoxc4Q08624 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Gm3809-201ENSMUST00000180973 1006 ntBASIC13.6□□□□□ -0.23
Hoxc4Q08624 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Gm29741-201ENSMUST00000192667 421 ntBASIC13.6□□□□□ -0.23
Hoxc4Q08624 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hoxc4Q08624 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC13.6□□□□□ -0.23
Hoxc4Q08624 CT030704.2-201ENSMUST00000228887 494 ntBASIC13.6□□□□□ -0.23
Hoxc4Q08624 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC13.6□□□□□ -0.23
Hoxc4Q08624 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hoxc4Q08624 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Gm9856-201ENSMUST00000217077 2578 ntBASIC13.59□□□□□ -0.23
Hoxc4Q08624 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Gm37411-201ENSMUST00000194180 2282 ntBASIC13.59□□□□□ -0.23
Hoxc4Q08624 AC168058.1-201ENSMUST00000219521 2282 ntBASIC13.59□□□□□ -0.23
Hoxc4Q08624 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Hoxc4Q08624 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms