Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm22190-201ENSMUST00000103827 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm22191-201ENSMUST00000103831 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm24721-201ENSMUST00000103849 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm28018-201ENSMUST00000103869 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm26399-201ENSMUST00000103937 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm6222-201ENSMUST00000120787 396 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm6736-201ENSMUST00000166583 948 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm25349-201ENSMUST00000177728 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm23616-201ENSMUST00000177797 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm25871-201ENSMUST00000177816 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm24752-201ENSMUST00000178240 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm24496-201ENSMUST00000178287 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm25649-201ENSMUST00000178476 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm25548-201ENSMUST00000178681 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm23147-201ENSMUST00000178841 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm26095-201ENSMUST00000179270 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm22171-201ENSMUST00000179283 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm23936-201ENSMUST00000179354 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm22619-201ENSMUST00000179516 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm25255-201ENSMUST00000179579 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm24755-201ENSMUST00000179691 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm26506-201ENSMUST00000179692 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm25086-201ENSMUST00000179931 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm23243-201ENSMUST00000180047 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm24659-201ENSMUST00000180212 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm24169-201ENSMUST00000180244 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm23689-201ENSMUST00000180354 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm27359-201ENSMUST00000184153 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm27785-201ENSMUST00000184268 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm27466-201ENSMUST00000184396 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm27703-201ENSMUST00000184836 110 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Gm43073-201ENSMUST00000198200 1189 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Ddx56Q9D0R4 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Gm45546-201ENSMUST00000211053 2394 ntBASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Gm38102-201ENSMUST00000192791 1935 ntBASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Gm13823-201ENSMUST00000119930 345 ntBASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Gm37935-201ENSMUST00000192012 982 ntBASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Gm9109-201ENSMUST00000120254 1405 ntBASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Ddx56Q9D0R4 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ddx56Q9D0R4 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ddx56Q9D0R4 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ddx56Q9D0R4 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ddx56Q9D0R4 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ddx56Q9D0R4 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ddx56Q9D0R4 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC14.97□□□□□ -0.01
Ddx56Q9D0R4 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ddx56Q9D0R4 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Ddx56Q9D0R4 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Ddx56Q9D0R4 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms