Protein–RNA interactions for Protein: Q4ACU6

Shank3, SH3 and multiple ankyrin repeat domains protein 3, mousemouse

Predictions only

Length 1,730 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shank3Q4ACU6 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Gm9431-201ENSMUST00000119765 1051 ntBASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Gm12749-201ENSMUST00000122138 1159 ntBASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Gm38000-201ENSMUST00000192390 1215 ntBASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Gm42550-201ENSMUST00000201553 960 ntBASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Gm9755-201ENSMUST00000032981 1356 ntBASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shank3Q4ACU6 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Mir5132-201ENSMUST00000175166 71 ntBASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Gm6621-201ENSMUST00000193251 772 ntBASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Gm18935-201ENSMUST00000212692 664 ntBASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Gm18630-201ENSMUST00000222109 1397 ntBASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shank3Q4ACU6 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC17.34■□□□□ 0.37
Shank3Q4ACU6 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shank3Q4ACU6 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Shank3Q4ACU6 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Shank3Q4ACU6 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Shank3Q4ACU6 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Shank3Q4ACU6 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Shank3Q4ACU6 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Shank3Q4ACU6 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Shank3Q4ACU6 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC17.33■□□□□ 0.37
Shank3Q4ACU6 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Shank3Q4ACU6 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Shank3Q4ACU6 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC17.33■□□□□ 0.36
Shank3Q4ACU6 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC17.33■□□□□ 0.36
Shank3Q4ACU6 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms