Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm11425-201ENSMUST00000119608 498 ntBASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Gm6244-201ENSMUST00000178732 841 ntBASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Gm43630-201ENSMUST00000201550 776 ntBASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Gm9396-201ENSMUST00000076703 567 ntBASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 AC174678.1-201ENSMUST00000228007 2749 ntBASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Upf3aQ3ULJ3 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Mir1894-201ENSMUST00000122802 81 ntBASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Gm18027-201ENSMUST00000218947 619 ntBASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3aQ3ULJ3 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Gm5912-201ENSMUST00000122282 1438 ntBASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Gm42632-201ENSMUST00000201707 2411 ntBASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Gm5303-201ENSMUST00000117943 1252 ntBASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Gm17794-201ENSMUST00000220252 955 ntBASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3aQ3ULJ3 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Gm45605-201ENSMUST00000210265 4269 ntBASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Upf3aQ3ULJ3 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms