Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC17.03■□□□□ 0.32
Rfx1P48377 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 Gm6184-201ENSMUST00000120403 1261 ntBASIC17.03■□□□□ 0.32
Rfx1P48377 Gm13597-201ENSMUST00000121239 375 ntBASIC17.03■□□□□ 0.32
Rfx1P48377 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC17.03■□□□□ 0.32
Rfx1P48377 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Rfx1P48377 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
Rfx1P48377 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC17.03■□□□□ 0.32
Rfx1P48377 AC153937.1-201ENSMUST00000218734 412 ntBASIC17.03■□□□□ 0.32
Rfx1P48377 AV026068-213ENSMUST00000223675 1171 ntBASIC17.03■□□□□ 0.32
Rfx1P48377 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC17.03■□□□□ 0.32
Rfx1P48377 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 AC121801.1-201ENSMUST00000225363 1899 ntBASIC17.03■□□□□ 0.32
Rfx1P48377 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rfx1P48377 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Rfx1P48377 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Rfx1P48377 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Rfx1P48377 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Rfx1P48377 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Rfx1P48377 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Rfx1P48377 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Rfx1P48377 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Rfx1P48377 Gm13036-201ENSMUST00000117799 748 ntBASIC17.02■□□□□ 0.32
Rfx1P48377 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Rfx1P48377 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC17.02■□□□□ 0.32
Rfx1P48377 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Rfx1P48377 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Rfx1P48377 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Rfx1P48377 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Rfx1P48377 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Rfx1P48377 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Rfx1P48377 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Rfx1P48377 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Rfx1P48377 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Rfx1P48377 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
Rfx1P48377 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC17.01■□□□□ 0.31
Rfx1P48377 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC17.01■□□□□ 0.31
Rfx1P48377 Gm6944-201ENSMUST00000182449 1006 ntBASIC17.01■□□□□ 0.31
Rfx1P48377 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC17.01■□□□□ 0.31
Rfx1P48377 AC131709.1-201ENSMUST00000224731 1180 ntBASIC17.01■□□□□ 0.31
Rfx1P48377 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC17.01■□□□□ 0.31
Rfx1P48377 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Rfx1P48377 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
Rfx1P48377 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Rfx1P48377 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
Rfx1P48377 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Rfx1P48377 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Gm16026-204ENSMUST00000162652 683 ntBASIC17■□□□□ 0.31
Rfx1P48377 Gm8584-201ENSMUST00000171982 758 ntBASIC17■□□□□ 0.31
Rfx1P48377 Gm37230-201ENSMUST00000194491 818 ntBASIC17■□□□□ 0.31
Rfx1P48377 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC17■□□□□ 0.31
Rfx1P48377 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
Rfx1P48377 Gm37844-201ENSMUST00000192473 4097 ntBASIC17■□□□□ 0.31
Rfx1P48377 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms