Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Gm6912-201ENSMUST00000117218 544 ntBASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 AC165157.4-201ENSMUST00000220587 139 ntBASIC15.45■□□□□ 0.06
Trim54Q9ERP3 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Trim54Q9ERP3 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Gm15460-201ENSMUST00000118147 391 ntBASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Gm12091-201ENSMUST00000146791 830 ntBASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Gm28631-201ENSMUST00000190740 334 ntBASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Gm31326-201ENSMUST00000191856 1048 ntBASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Ighv1-25-201ENSMUST00000195638 345 ntBASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim54Q9ERP3 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Gm15393-201ENSMUST00000120499 219 ntBASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Gm12138-201ENSMUST00000122180 951 ntBASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Gm8515-201ENSMUST00000194852 576 ntBASIC15.43■□□□□ 0.06
Trim54Q9ERP3 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Gm18018-201ENSMUST00000198273 408 ntBASIC15.43■□□□□ 0.06
Trim54Q9ERP3 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Gm15163-201ENSMUST00000120749 1302 ntBASIC15.43■□□□□ 0.06
Trim54Q9ERP3 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC15.43■□□□□ 0.06
Trim54Q9ERP3 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Gm12585-201ENSMUST00000117307 290 ntBASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Gm37917-201ENSMUST00000194711 392 ntBASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Gm9908-201ENSMUST00000211534 448 ntBASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC15.42■□□□□ 0.06
Trim54Q9ERP3 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms