Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Gm11675-201ENSMUST00000121873 832 ntBASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Gm9109-201ENSMUST00000120254 1405 ntBASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scn4aQ9ER60 Gm43352-201ENSMUST00000196419 3065 ntBASIC19.02■□□□□ 0.63
Scn4aQ9ER60 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC19.02■□□□□ 0.63
Scn4aQ9ER60 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
Scn4aQ9ER60 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
Scn4aQ9ER60 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC19.02■□□□□ 0.63
Scn4aQ9ER60 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Scn4aQ9ER60 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Scn4aQ9ER60 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC19.02■□□□□ 0.63
Scn4aQ9ER60 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Scn4aQ9ER60 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Scn4aQ9ER60 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Scn4aQ9ER60 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Scn4aQ9ER60 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
Scn4aQ9ER60 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Scn4aQ9ER60 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
Scn4aQ9ER60 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Scn4aQ9ER60 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Gm19221-201ENSMUST00000221827 1477 ntBASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Gm16481-201ENSMUST00000119074 1227 ntBASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Gm27046-201ENSMUST00000182160 463 ntBASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Gm37042-201ENSMUST00000193816 581 ntBASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Gm4607-201ENSMUST00000206649 577 ntBASIC19.01■□□□□ 0.63
Scn4aQ9ER60 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scn4aQ9ER60 AC167669.2-201ENSMUST00000224417 1620 ntBASIC19■□□□□ 0.63
Scn4aQ9ER60 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
Scn4aQ9ER60 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scn4aQ9ER60 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC19■□□□□ 0.63
Scn4aQ9ER60 Gm11211-201ENSMUST00000143618 359 ntTSL 3 BASIC19■□□□□ 0.63
Scn4aQ9ER60 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
Scn4aQ9ER60 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Scn4aQ9ER60 CT025551.1-201ENSMUST00000223996 692 ntBASIC19■□□□□ 0.63
Scn4aQ9ER60 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scn4aQ9ER60 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19■□□□□ 0.63
Scn4aQ9ER60 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scn4aQ9ER60 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC19■□□□□ 0.63
Scn4aQ9ER60 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC19■□□□□ 0.63
Scn4aQ9ER60 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC19■□□□□ 0.63
Scn4aQ9ER60 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC19■□□□□ 0.63
Scn4aQ9ER60 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Scn4aQ9ER60 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19■□□□□ 0.63
Scn4aQ9ER60 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC19■□□□□ 0.63
Scn4aQ9ER60 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scn4aQ9ER60 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC19■□□□□ 0.63
Scn4aQ9ER60 Gm11531-201ENSMUST00000117614 555 ntBASIC19■□□□□ 0.63
Scn4aQ9ER60 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC19■□□□□ 0.63
Scn4aQ9ER60 Gm8365-201ENSMUST00000197334 648 ntBASIC19■□□□□ 0.63
Scn4aQ9ER60 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC19■□□□□ 0.63
Scn4aQ9ER60 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC19■□□□□ 0.63
Scn4aQ9ER60 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scn4aQ9ER60 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scn4aQ9ER60 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC19■□□□□ 0.63
Scn4aQ9ER60 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scn4aQ9ER60 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scn4aQ9ER60 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Scn4aQ9ER60 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 65 ms