Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Gm7336-201ENSMUST00000107041 1232 ntBASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Gm9719-201ENSMUST00000162765 543 ntBASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Gm27631-201ENSMUST00000184163 466 ntBASIC17.28■□□□□ 0.36
Brf1Q8CFK2 AC121598.1-201ENSMUST00000228224 1019 ntBASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Brf1Q8CFK2 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Gm5566-201ENSMUST00000116118 459 ntBASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Gm15693-201ENSMUST00000120470 637 ntBASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Gm12882-201ENSMUST00000121696 517 ntBASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Brf1Q8CFK2 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Brf1Q8CFK2 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Brf1Q8CFK2 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Brf1Q8CFK2 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Brf1Q8CFK2 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
Brf1Q8CFK2 Gm6159-201ENSMUST00000191249 1724 ntBASIC17.27■□□□□ 0.35
Brf1Q8CFK2 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Brf1Q8CFK2 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Brf1Q8CFK2 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 AC154767.3-201ENSMUST00000225150 1342 ntBASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Gm13517-201ENSMUST00000120782 1495 ntBASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Gm45453-201ENSMUST00000211758 853 ntBASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Brf1Q8CFK2 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Gm45760-201ENSMUST00000212190 1782 ntBASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Gm28630-201ENSMUST00000187806 498 ntBASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Brf1Q8CFK2 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms