Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Usp40Q8BWR4 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Gm37728-201ENSMUST00000195025 2292 ntBASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Gm12960-201ENSMUST00000120017 1066 ntBASIC19.52■□□□□ 0.72
Usp40Q8BWR4 AC156560.2-201ENSMUST00000221232 264 ntBASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Usp40Q8BWR4 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
Usp40Q8BWR4 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Usp40Q8BWR4 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Usp40Q8BWR4 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Usp40Q8BWR4 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 AC115735.4-201ENSMUST00000227460 1944 ntBASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Gm15806-201ENSMUST00000120696 955 ntBASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Usp40Q8BWR4 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Gm10605-202ENSMUST00000183019 3198 ntBASIC19.5■□□□□ 0.71
Usp40Q8BWR4 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Gm18905-201ENSMUST00000205454 928 ntBASIC19.5■□□□□ 0.71
Usp40Q8BWR4 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Gm42471-201ENSMUST00000201457 1865 ntBASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Usp40Q8BWR4 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp40Q8BWR4 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp40Q8BWR4 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp40Q8BWR4 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Usp40Q8BWR4 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
Usp40Q8BWR4 AC114543.1-201ENSMUST00000226451 1558 ntBASIC19.49■□□□□ 0.71
Usp40Q8BWR4 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp40Q8BWR4 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp40Q8BWR4 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp40Q8BWR4 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp40Q8BWR4 CT010478.1-201ENSMUST00000220747 2787 ntBASIC19.49■□□□□ 0.71
Usp40Q8BWR4 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp40Q8BWR4 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp40Q8BWR4 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
Usp40Q8BWR4 AC155252.1-201ENSMUST00000226462 1208 ntBASIC19.49■□□□□ 0.71
Usp40Q8BWR4 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
Usp40Q8BWR4 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp40Q8BWR4 Gm25857-201ENSMUST00000082788 129 ntBASIC19.49■□□□□ 0.71
Usp40Q8BWR4 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Usp40Q8BWR4 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms