Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ubfd1Q78JW9 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ubfd1Q78JW9 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ubfd1Q78JW9 Gm37736-201ENSMUST00000193564 2802 ntBASIC13.94□□□□□ -0.18
Ubfd1Q78JW9 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ubfd1Q78JW9 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ubfd1Q78JW9 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ubfd1Q78JW9 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Ubfd1Q78JW9 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Ubfd1Q78JW9 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Gm38058-201ENSMUST00000194323 4368 ntBASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 AC135669.1-201ENSMUST00000213585 412 ntBASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Ubfd1Q78JW9 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Gm9522-201ENSMUST00000182394 926 ntBASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 AC153872.1-201ENSMUST00000199539 128 ntBASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Gm44608-201ENSMUST00000206827 855 ntBASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 AC102291.3-201ENSMUST00000226566 405 ntBASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 AC154806.6-201ENSMUST00000228192 202 ntBASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Ubfd1Q78JW9 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ubfd1Q78JW9 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms