Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC12.98□□□□□ -0.33
Usf1Q61069 AC140451.2-201ENSMUST00000228030 664 ntBASIC12.98□□□□□ -0.33
Usf1Q61069 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Usf1Q61069 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Usf1Q61069 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Usf1Q61069 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Usf1Q61069 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC12.98□□□□□ -0.33
Usf1Q61069 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Usf1Q61069 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC12.98□□□□□ -0.33
Usf1Q61069 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Usf1Q61069 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Usf1Q61069 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Usf1Q61069 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Usf1Q61069 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Usf1Q61069 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC12.98□□□□□ -0.33
Usf1Q61069 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Usf1Q61069 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Usf1Q61069 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Usf1Q61069 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Usf1Q61069 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Usf1Q61069 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Usf1Q61069 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Usf1Q61069 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Usf1Q61069 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC12.97□□□□□ -0.33
Usf1Q61069 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Usf1Q61069 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Usf1Q61069 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Usf1Q61069 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Usf1Q61069 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
Usf1Q61069 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC12.97□□□□□ -0.33
Usf1Q61069 Gm15957-201ENSMUST00000118893 974 ntBASIC12.97□□□□□ -0.33
Usf1Q61069 Gm11814-201ENSMUST00000119515 929 ntBASIC12.97□□□□□ -0.33
Usf1Q61069 Gm14660-201ENSMUST00000119809 575 ntBASIC12.97□□□□□ -0.33
Usf1Q61069 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC12.97□□□□□ -0.33
Usf1Q61069 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC12.97□□□□□ -0.33
Usf1Q61069 Gm27731-201ENSMUST00000185192 107 ntBASIC12.97□□□□□ -0.33
Usf1Q61069 Gm44974-201ENSMUST00000206387 1279 ntBASIC12.97□□□□□ -0.33
Usf1Q61069 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Usf1Q61069 AC154171.1-201ENSMUST00000224610 643 ntBASIC12.97□□□□□ -0.33
Usf1Q61069 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Usf1Q61069 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Usf1Q61069 Olfr582-201ENSMUST00000098212 960 ntBASIC12.97□□□□□ -0.33
Usf1Q61069 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Usf1Q61069 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC12.97□□□□□ -0.33
Usf1Q61069 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Usf1Q61069 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Usf1Q61069 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Usf1Q61069 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC12.97□□□□□ -0.33
Usf1Q61069 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Usf1Q61069 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Usf1Q61069 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC12.97□□□□□ -0.33
Usf1Q61069 Zscan30-202ENSMUST00000224144 1458 ntBASIC12.97□□□□□ -0.33
Usf1Q61069 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Usf1Q61069 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Usf1Q61069 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Usf1Q61069 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Usf1Q61069 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Usf1Q61069 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Usf1Q61069 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC12.96□□□□□ -0.33
Usf1Q61069 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Usf1Q61069 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Usf1Q61069 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Usf1Q61069 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC12.96□□□□□ -0.33
Usf1Q61069 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Usf1Q61069 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Usf1Q61069 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Usf1Q61069 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC12.96□□□□□ -0.33
Usf1Q61069 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC12.96□□□□□ -0.33
Usf1Q61069 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC12.96□□□□□ -0.33
Usf1Q61069 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC12.96□□□□□ -0.33
Usf1Q61069 Gm27847-201ENSMUST00000183711 107 ntBASIC12.96□□□□□ -0.33
Usf1Q61069 Gm27375-201ENSMUST00000183799 107 ntBASIC12.96□□□□□ -0.33
Usf1Q61069 Gm2495-201ENSMUST00000191160 466 ntBASIC12.96□□□□□ -0.33
Usf1Q61069 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Usf1Q61069 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Usf1Q61069 Gm30437-201ENSMUST00000206086 1201 ntBASIC12.96□□□□□ -0.33
Usf1Q61069 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
Usf1Q61069 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC12.96□□□□□ -0.33
Usf1Q61069 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Usf1Q61069 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Usf1Q61069 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Usf1Q61069 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Usf1Q61069 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.34
Usf1Q61069 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Usf1Q61069 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Usf1Q61069 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC12.96□□□□□ -0.34
Usf1Q61069 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Usf1Q61069 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Usf1Q61069 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Usf1Q61069 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Usf1Q61069 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC12.96□□□□□ -0.34
Usf1Q61069 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Usf1Q61069 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Usf1Q61069 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Usf1Q61069 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC12.95□□□□□ -0.34
Usf1Q61069 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Usf1Q61069 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
Usf1Q61069 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Usf1Q61069 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Usf1Q61069 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 105.1 ms