Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Gm15240-201ENSMUST00000118156 720 ntBASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Gm7446-201ENSMUST00000221035 1240 ntBASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Upf3aQ3ULJ3 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Gm27892-201ENSMUST00000185017 106 ntBASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 AC155258.1-201ENSMUST00000219303 253 ntBASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3aQ3ULJ3 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3aQ3ULJ3 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms