Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Rfx1P48377 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Rfx1P48377 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Rfx1P48377 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC17.11■□□□□ 0.33
Rfx1P48377 Gm7153-201ENSMUST00000117092 455 ntBASIC17.11■□□□□ 0.33
Rfx1P48377 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC17.11■□□□□ 0.33
Rfx1P48377 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC17.11■□□□□ 0.33
Rfx1P48377 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC17.11■□□□□ 0.33
Rfx1P48377 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Rfx1P48377 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
Rfx1P48377 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Rfx1P48377 Gm9252-201ENSMUST00000172364 1602 ntBASIC17.1■□□□□ 0.33
Rfx1P48377 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Rfx1P48377 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Rfx1P48377 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC17.1■□□□□ 0.33
Rfx1P48377 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Rfx1P48377 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC17.1■□□□□ 0.33
Rfx1P48377 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC17.1■□□□□ 0.33
Rfx1P48377 Gm14042-201ENSMUST00000120139 833 ntBASIC17.1■□□□□ 0.33
Rfx1P48377 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC17.1■□□□□ 0.33
Rfx1P48377 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC17.1■□□□□ 0.33
Rfx1P48377 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Rfx1P48377 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC17.1■□□□□ 0.33
Rfx1P48377 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC17.1■□□□□ 0.33
Rfx1P48377 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC17.1■□□□□ 0.33
Rfx1P48377 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Rfx1P48377 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rfx1P48377 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rfx1P48377 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rfx1P48377 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rfx1P48377 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Rfx1P48377 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Rfx1P48377 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rfx1P48377 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rfx1P48377 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Rfx1P48377 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC17.09■□□□□ 0.33
Rfx1P48377 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rfx1P48377 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Rfx1P48377 Gm8096-201ENSMUST00000209921 1591 ntBASIC17.09■□□□□ 0.33
Rfx1P48377 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rfx1P48377 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Rfx1P48377 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rfx1P48377 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rfx1P48377 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Rfx1P48377 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rfx1P48377 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rfx1P48377 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rfx1P48377 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rfx1P48377 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Rfx1P48377 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rfx1P48377 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rfx1P48377 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rfx1P48377 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC17.08■□□□□ 0.32
Rfx1P48377 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Rfx1P48377 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Rfx1P48377 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Rfx1P48377 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC17.08■□□□□ 0.32
Rfx1P48377 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Rfx1P48377 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rfx1P48377 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rfx1P48377 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Rfx1P48377 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Rfx1P48377 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Rfx1P48377 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms