Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Chmp6P0C0A3 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Chmp6P0C0A3 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Gm2810-201ENSMUST00000118681 990 ntBASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Gm5479-201ENSMUST00000160578 435 ntBASIC15.6■□□□□ 0.09
Chmp6P0C0A3 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Gm4691-201ENSMUST00000182339 1000 ntBASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Ighv8-7-201ENSMUST00000194349 297 ntBASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Gm2451-201ENSMUST00000199447 999 ntBASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Gm10290-201ENSMUST00000200451 999 ntBASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Gm45098-201ENSMUST00000207179 657 ntBASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Chmp6P0C0A3 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Gm8749-201ENSMUST00000117737 331 ntBASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Gm5312-201ENSMUST00000203728 547 ntBASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Chmp6P0C0A3 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
Chmp6P0C0A3 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
Chmp6P0C0A3 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Chmp6P0C0A3 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Chmp6P0C0A3 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Chmp6P0C0A3 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Chmp6P0C0A3 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
Chmp6P0C0A3 Gm6756-201ENSMUST00000180647 1620 ntBASIC15.58■□□□□ 0.09
Chmp6P0C0A3 Gm37019-201ENSMUST00000192133 2134 ntBASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Gm8396-201ENSMUST00000057361 823 ntBASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Gm42934-201ENSMUST00000196920 1345 ntBASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Chmp6P0C0A3 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Chmp6P0C0A3 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms