Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC11.18□□□□□ -0.62
Hoxd3P09027 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Hoxd3P09027 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Hoxd3P09027 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm38058-201ENSMUST00000194323 4368 ntBASIC11.18□□□□□ -0.62
Hoxd3P09027 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC11.18□□□□□ -0.62
Hoxd3P09027 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Hoxd3P09027 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC11.17□□□□□ -0.62
Hoxd3P09027 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Hoxd3P09027 Gm8369-201ENSMUST00000079855 1374 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Hoxd3P09027 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC11.17□□□□□ -0.62
Hoxd3P09027 Gm24543-201ENSMUST00000103867 82 ntBASIC11.17□□□□□ -0.62
Hoxd3P09027 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC11.17□□□□□ -0.62
Hoxd3P09027 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC11.17□□□□□ -0.62
Hoxd3P09027 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Hoxd3P09027 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC11.17□□□□□ -0.62
Hoxd3P09027 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC11.17□□□□□ -0.62
Hoxd3P09027 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Hoxd3P09027 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Hoxd3P09027 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Hoxd3P09027 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Hoxd3P09027 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC11.16□□□□□ -0.62
Hoxd3P09027 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
Hoxd3P09027 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC11.16□□□□□ -0.62
Hoxd3P09027 Gm16107-201ENSMUST00000162523 862 ntBASIC11.16□□□□□ -0.62
Hoxd3P09027 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC11.16□□□□□ -0.62
Hoxd3P09027 Gm27533-201ENSMUST00000183800 152 ntBASIC11.16□□□□□ -0.62
Hoxd3P09027 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC11.16□□□□□ -0.62
Hoxd3P09027 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 E330011O21Rik-205ENSMUST00000211317 1062 ntTSL 5 BASIC11.16□□□□□ -0.62
Hoxd3P09027 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Prl6a1-201ENSMUST00000091679 1093 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Hoxd3P09027 Prl6a1-202ENSMUST00000091680 868 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC11.16□□□□□ -0.62
Hoxd3P09027 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Hoxd3P09027 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Hoxd3P09027 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 Gm9768-201ENSMUST00000206007 2861 ntBASIC11.15□□□□□ -0.62
Hoxd3P09027 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
Hoxd3P09027 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Hoxd3P09027 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC11.15□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms